ATAC-Seq Analysis

What is ATAC sequencing?

ATAC-Seq is Assay for Transposase-Accessible Chromatin sequencing. It is used for genome-wide identification of chromatin accessibility. The assay uses hyperactive Tn5 transposase, which both cuts and ligates adapters at accessible regions of chromatin. Sequencing reads can then be used to determine regions of accessible chromatin and map regions of transcription factor binding and nucleosome position. Unlike other assays that need millions of cells, ATAC-Seq has a simple protocol that works well with 50,000 cells.

Fast, automated ATAC-Seq analysis

• Data-specific reports

Able to scale from a single sample to thousands with the help of parallel processing. No coding required.

• Start analyzing now

Running ATAC-Seq pipelines is as simple as uploading a .fastq file and clicking a button.

• Speedy results

Sample analysis usually takes under an hour to finish, thanks to cloud-native, ultra- fast servers.

Reports tailored to your ATAC-Seq data

Basepair’s ATAC-Seq piplines include comprehensive options such as alignment, QC, read counts, gene body and transcriprtion start site heatmaps, open chromatin region identification, and annotation. After you run your analysis, all plots and figures are generated automatically, giving you publication-ready results instantly!